Publications made with imaging support from NMI.


Nordenström M, Benselfelt T, Hollertz R, …, Söderberg D, Wågberg L, “The structure of cellulose nanofibril networks at low concentrations and their stabilizing action on colloidal particles.”, Carbohydr Polym, 2022, 297, 120046,

Crescitelli R, Filges S, Karimi N, …, Lässer C, Olofsson Bagge R, “Extracellular vesicle DNA from human melanoma tissues contains cancer-specific mutations.”, Front Cell Dev Biol, 2022, 10, 1028854,

Moffitt JR, Lundberg E, Heyn H, “The emerging landscape of spatial profiling technologies.”, Nat. Rev. Genet., 2022, 23 (12), 741-759,

Bonilla JC, Sørensen JL, Warming AS, Clausen MP, “Quantitative image analysis of protein foam microstructure and its correlation with rheological properties: Egg white foam”, Food Hydrocolloids, 2022, 133, 108010,

Tonge JJ, Notley SV, Dunning MJ, …, Panoutsos G, Gad AKB, “Hyaluronan nanoscale clustering and Hyaluronan synthase 2 expression are linked to the invasion of child fibroblasts and infantile fibrosarcoma in vitro and in vivo.”, Sci Rep, 2022, 12 (1), 19835,

Forsberg KM, Graffmo KS, Stenvall E, …, Brännström T, Andersen PM, “Widespread CNS pathology in amyotrophic lateral sclerosis homozygous for the D90A SOD1 mutation”, Acta Neuropathol, 2022,

Leyhr J, Waldmann L, Filipek-Górniok B, …, Allalou A, Haitina T, “A novel cis-regulatory element drives early expression of Nkx3.2 in the gnathostome primary jaw joint.”, Elife, 2022, 11,

Maurya DK, Berghard A, Bohm S, “A multivesicular body-like organelle mediates stimulus-regulated trafficking of olfactory ciliary transduction proteins.”, Nat Commun, 2022, 13 (1), 6889,

Schneider KL, Ahmadpour D, Keuenhof KS, …, Nyström T, Widlund PO, “Using reporters of different misfolded proteins reveals differential strategies in processing protein aggregates.”, J. Biol. Chem., 2022, 298 (11), 102476,

Gineste C, Youhanna S, Vorrink SU, …, Lauschke VM, Westerblad H, “Enzymatically dissociated muscle fibers display rapid dedifferentiation and impaired mitochondrial calcium control”, iScience, 2022, 105654,

Michno W, Koutarapu S, Camacho R, …, Lashley T, Hanrieder J, “Chemical traits of cerebral amyloid angiopathy in familial British‐, Danish‐, and non‐Alzheimer ʼs dementias”, J. Neurochem., 2022, 163 (3), 233-246,

Schlegel J, Porebski B, Andronico L, …, Fernandez-Capetillo O, Sezgin E, “A Multiparametric and High-Throughput Platform for Host-Virus Binding Screens”,, 2022,

Koutarapu S, Ge J, Jha D, …, Michno W, Hanrieder J, “Correlative Chemical Imaging Identifies Amyloid Peptide Signatures of Neuritic Plaques and Dystrophy in Human Sporadic Alzheimer’s Disease.”, Brain Connect, 2022,

Iribarren C, Nordlander S, Sundin J, …, Simrén M, Öhman L, “Fecal luminal factors from patients with irritable bowel syndrome induce distinct gene expression of colonoids.”, Neurogastroenterol. Motil., 2022, 34 (10), e14390,

Dolan B, Ermund A, Martinez-Abad B, Johansson MEV, Hansson GC, “Clearance of small intestinal crypts involves goblet cell mucus secretion by intracellular granule rupture and enterocyte ion transport.”, Sci Signal, 2022, 15 (752), eabl5848,

Ruiz M, Svensk E, Einarsson E, Grahn EP, Pilon M, “A small molecule screen for paqr-2 suppressors identifies Tyloxapol as a membrane fluidizer for C. elegans and mammalian cells.”, Biochimica et Biophysica Acta (BBA) – Biomembranes, 2022, 1864 (9), 183959,

Waldmann L, Leyhr J, Zhang H, …, Öhman-Mägi C, Haitina T, “The role of Gdf5 in the development of the zebrafish fin endoskeleton.”, Dev. Dyn., 2022, 251 (9), 1535-1549,

Song J, Nilsson G, Xu Y, …, Zhu C, Wang X, “Temporal brain transcriptome analysis reveals key pathological events after germinal matrix hemorrhage in neonatal rats.”, J. Cereb. Blood Flow Metab., 2022, 42 (9), 1632-1649,

Ragaller F, Andronico L, Sykora J, …, Vattulainen I, Sezgin E, “Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties.”, Open Biol, 2022, 12 (9), 220175,

Bekkhus T, Avenel C, Hanna S, …, Wählby C, Ulvmar MH, “Automated detection of vascular remodeling in tumor-draining lymph nodes by the deep-learning tool HEV-finder.”, J. Pathol., 2022, 258 (1), 4-11,

Raykova D, Kermpatsou D, Malmqvist T, …, Kampf C, Söderberg O, “A method for Boolean analysis of protein interactions at a molecular level.”, Nat Commun, 2022, 13 (1), 4755,

Gupta A, Sabirsh A, Wahlby C, Sintorn I, “SimSearch: A Human-in-The-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images.”, IEEE J Biomed Health Inform, 2022, 26 (8), 4079-4089,

Mund A, Coscia F, Kriston A, …, Horvath P, Mann M, “Deep Visual Proteomics defines single-cell identity and heterogeneity.”, Nat. Biotechnol., 2022, 40 (8), 1231-1240,

Marco Salas S, Yuan X, Sylven C, …, Wählby C, Partel G, “De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks.”, PLoS Comput. Biol., 2022, 18 (8), e1010366,

Haase R, Fazeli E, Legland D, …, Klemm A, Tischer C, “A Hitchhiker’s guide through the bio-image analysis software universe.”, FEBS Lett., 2022,

Stenberg S, Li J, Gjuvsland AB, …, Omholt SW, Warringer J, “Genetically controlled mtDNA deletions prevent ROS damage by arresting oxidative phosphorylation.”, Elife, 2022, 11,

Banerjee D, Nayakawde NB, Antony D, …, Ul Haq U, Olausson M, “Characterization of Decellularized Implants for Extracellular Matrix Integrity and Immune Response Elicitation.”, Tissue Eng Part A, 2022, 28 (13-14), 621-639,

Kouznetsova A, Liu JG, Valentiniene S, Brismar H, Höög C, “Age‐dependent aneuploidy in mammalian oocytes instigated at the second meiotic division”, Aging Cell, 2022, 21 (7),

Zhu X, Xie X, Das H, …, Hällberg BM, Falkenberg M, “Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization.”, Cell, 2022, 185 (13), 2309-2323.e24,

Arnold H, Panara V, Hußmann M, …, Schulte-Merker S, Koltowska K, “mafba and mafbb differentially regulate lymphatic endothelial cell migration in topographically distinct manners.”, Cell Rep, 2022, 39 (12), 110982,

Verhoeven BM, Mei S, Olsen TK, …, Johnsen JI, Baryawno N, “The immune cell atlas of human neuroblastoma”, Cell Reports Medicine, 2022, 3 (6), 100657,

Hübner B, von Otter E, Ahsan B, …, Ludwig A, Sandin S, “Ultrastructure and nuclear architecture of telomeric chromatin revealed by correlative light and electron microscopy.”, Nucleic Acids Res., 2022, 50 (9), 5047-5063,

Larsson S, Kettunen P, Carén H, “Orthotopic Transplantation of Human Paediatric High-Grade Glioma in Zebrafish Larvae.”, Brain Sci, 2022, 12 (5),

Elebring E, Wallenius V, Casselbrant A, …, Marschall HU, Fändriks L, “A Fatty Diet Induces a Jejunal Ketogenesis Which Inhibits Local SGLT1-Based Glucose Transport via an Acetylation Mechanism-Results from a Randomized Cross-Over Study between Iso-Caloric High-Fat versus High-Carbohydrate Diets in Healthy Volunteers.”, Nutrients, 2022, 14 (9),

Julner A, Abbasi M, Menéndez-Benito V, “The microtubule plus-end tracking protein Bik1 is required for chromosome congression.”, Mol. Biol. Cell, 2022, 33 (5), br7,

Bradley F, Franzén Boger M, Kaldhusdal V, …, Tjernlund A, Broliden K, “Multi-omics analysis of the cervical epithelial integrity of women using depot medroxyprogesterone acetate.”, PLoS Pathog., 2022, 18 (5), e1010494,

Ichioka Y, Derks J, Dahlén G, Berglundh T, Larsson L, “Mechanical removal of biofilm on titanium discs: An in vitro study.”, J. Biomed. Mater. Res. Part B Appl. Biomater., 2022, 110 (5), 1044-1055,

Nair S, Leverin AL, Rocha-Ferreira E, …, Mallard C, Hagberg H, “Induction of Mitochondrial Fragmentation and Mitophagy after Neonatal Hypoxia-Ischemia.”, Cells, 2022, 11 (7),

Hallberg I, Persson S, Olovsson M, …, Rüegg J, Sjunnesson YCB, “Bovine oocyte exposure to perfluorohexane sulfonate (PFHxS) induces phenotypic, transcriptomic, and DNA methylation changes in resulting embryos in vitro.”, Reprod Toxicol, 2022, 109, 19-30,

Kaimal JM, Tampere M, Le TH, …, Östling P, Stadler C, “Subcellular mapping of the protein landscape of SARS-CoV-2 infected cells for target-centric drug repurposing”,, 2022,

Cuéllar J, Vallin J, Svanström A, …, Valpuesta JM, Grantham J, “The Molecular Chaperone CCT Sequesters Gelsolin and Protects it from Cleavage by Caspase-3.”, J. Mol. Biol., 2022, 434 (5), 167399,

Brodin ATS, Gabulya S, Wellfelt K, Karlsson TE, “Five Hours Total Sleep Deprivation Does Not Affect CA1 Dendritic Length or Spine Density.”, Front. Synaptic Neurosci., 2022, 14, 854160,

Schmied L, Luu TT, Søndergaard JN, …, Saeed MB, Höglund P, “Control of NK cell tolerance in MHC class I-deficiency by regulated SHP-1 localization to the activating immune synapse”,, 2022,

Stenudd M, Sabelström H, Llorens-Bobadilla E, …, Barnabé-Heider F, Frisén J, “Identification of a discrete subpopulation of spinal cord ependymal cells with neural stem cell properties.”, Cell Rep, 2022, 38 (9), 110440,

Kay E, Stulz R, Becquart C, …, Andersson S, Kurczy M, “NanoSIMS Imaging Reveals the Impact of Ligand-ASO Conjugate Stability on ASO Subcellular Distribution”, Pharmaceutics, 2022, 14 (2), 463,

Nadeem A, Berg A, Pace H, …, Uhlin BE, Wai SN, “Protein-lipid interaction at low pH induces oligomerization of the MakA cytotoxin from Vibrio cholerae.”, Elife, 2022, 11,

Jalalvand E, Alvelid J, Coceano G, …, Grillner S, Testa I, “ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the lamprey central canal.”, Elife, 2022, 11,

Michno W, Wehrli PM, Koutarapu S, …, Hopf C, Hanrieder J, “Structural amyloid plaque polymorphism is associated with distinct lipid accumulations revealed by trapped ion mobility mass spectrometry imaging.”, J. Neurochem., 2022, 160 (4), 482-498,

Aswendt M, Wilhelmsson U, Wieters F, …, Pekna M, Pekny M, “Reactive astrocytes prevent maladaptive plasticity after ischemic stroke.”, Prog Neurobiol, 2022, 209, 102199,

Thomsen C, Malfatti E, Jovanovic A, …, Lindberg C, Oldfors A, “Proteomic characterisation of polyglucosan bodies in skeletal muscle in RBCK1 deficiency.”, Neuropathol Appl Neurobiol, 2022, 48 (1), e12761,

Habicher J, Varshney GK, Waldmann L, …, Burgess SM, Ledin J, “Chondroitin/dermatan sulfate glycosyltransferase genes are essential for craniofacial development.”, PLoS Genet., 2022, 18 (2), e1010067,

Behanova A, Klemm A, Wählby C, “Spatial Statistics for Understanding Tissue Organization.”, Front Physiol, 2022, 13, 832417,

Bäcklund FG, Schmuck B, Miranda GHB, …, Rydén J, Rising A, “An Image-Analysis-Based Method for the Prediction of Recombinant Protein Fiber Tensile Strength.”, Materials (Basel), 2022, 15 (3),

Enrico A, Voulgaris D, Östmans R, …, Herland A, Stemme G, “3D Microvascularized Tissue Models by Laser-Based Cavitation Molding of Collagen.”, Adv Mater, 2022, e2109823,

Ekström K, Crescitelli R, Pétursson HI, …, Lässer C, Olofsson Bagge R, “Characterization of surface markers on extracellular vesicles isolated from lymphatic exudate from patients with breast cancer.”, BMC Cancer, 2022, 22 (1), 50,

Stoltenborg I, Peris-Sampedro F, Schéle E, …, Adan RAH, Dickson SL, “TRAPing Ghrelin-Activated Circuits: A Novel Tool to Identify, Target and Control Hormone-Responsive Populations in TRAP2 Mice.”, Int J Mol Sci, 2022, 23 (1),

Butt L, Unnersjö-Jess D, Höhne M, …, Schermer B, Benzing T, “Super-Resolution Imaging of the Filtration Barrier Suggests a Role for Podocin R229Q in Genetic Predisposition to Glomerular Disease.”, J. Am. Soc. Nephrol., 2022, 33 (1), 138-154,

Wang Y, Acs B, Robertson S, …, Hartman J, Rantalainen M, “Improved breast cancer histological grading using deep learning.”, Ann. Oncol., 2022, 33 (1), 89-98,

Klemm A, Miura K, “Batch Processing Methods in ImageJ”, Springer, 2022, 7-27,

Makasewicz K, Wennmalm S, Linse S, Sparr E, “Alfa-Synuclein-induced deformation of small unilamellar vesicles”, QRB Discovery, 2022, 3,

Mota A, Berezicki S, Wernersson E, Harbers L, Li-Wang X, Gradin K, Peuckert C, Crosetto N, Bienko M. “FRET-FISH probes chromatin compaction at individual genomic loci in single cells”. Nat Commun. 2022; 13(1):6680.

Enrico A, Voulgaris D, Östmans R, Sundaravadivel N, Moutaux L, Cordier A, Niklaus F, Herland A, Stemme G. “3D Microvascularized Tissue Models by Laser-Based Cavitation Molding of Collagen”. Adv Mater. 2022;34(11):e2109823.


Rabasco S, Nguyen TDK, Gu C, …, Phan NTN, Ewing AG, “Localization and Absolute Quantification of Dopamine in Discrete Intravesicular Compartments Using NanoSIMS Imaging.”, Int J Mol Sci, 2021, 23 (1),

Pozo-Rodrigálvarez A, Li Y, Stokowska A, …, Pekny M, Pekna M, “C3a Receptor Signaling Inhibits Neurodegeneration Induced by Neonatal Hypoxic-Ischemic Brain Injury.”, Front Immunol, 2021, 12, 768198,

Omrani A, de Vrind VAJ, Lodder B, …, Meye FJ, Adan RAH, “Identification of Novel Neurocircuitry Through Which Leptin Targets Multiple Inputs to the Dopamine System to Reduce Food Reward Seeking.”, Biol. Psychiatry, 2021, 90 (12), 843-852,

Carravilla P, Dasgupta A, Zhurgenbayeva G, …, Sezgin E, Eggeling C, “Long-term STED imaging of membrane packing and dynamics by exchangeable polarity-sensitive dyes.”, Biophysical Reports, 2021, 1 (2), None,

Unnersjö-Jess D, Ramdedovic A, Höhne M, …, Schermer B, Benzing T, “Three-Dimensional Super-Resolved Imaging of Paraffin-Embedded Kidney Samples”, Kidney360, 2021, 10.34067/KID.0005882021,

Barmpatsalou V, Dubbelboer IR, Rodler A, …, Pedersen BL, Bergström CAS, “Physiological properties, composition and structural profiling of porcine gastrointestinal mucus.”, Eur J Pharm Biopharm, 2021, 169, 156-167,

Hallberg I, Persson S, Olovsson M, …, Rüegg J, Sjunnesson YCB, “Perfluorooctane sulfonate (PFOS) exposure of bovine oocytes affects early embryonic development at human-relevant levels in an in vitro model.”, Toxicology, 2021, 464, 153028,

Qin Y, Huttlin EL, Winsnes CF, …, Lundberg E, Ideker T, “A multi-scale map of cell structure fusing protein images and interactions.”, Nature, 2021,

Ichioka Y, Derks J, Dahlén G, Berglundh T, Larsson L, “In vitro evaluation of chemical decontamination of titanium discs.”, Sci Rep, 2021, 11 (1), 22753,

Hickey JW, Neumann EK, Radtke AJ, …, Kelleher NL, Saka SK, “Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging.”, Nat. Methods, 2021,

Rambaran MA, Gorzsás A, Holmboe M, Ohlin CA, “Polyoxoniobates as molecular building blocks in thin films.”, Dalton Trans, 2021, 50 (44), 16030-16038,

van Husen LS, Katsori A, Meineke B, …, Schedin-Weiss S, Elsässer SJ, “Engineered Human Induced Pluripotent Cells Enable Genetic Code Expansion in Brain Organoids.”, ChemBioChem, 2021, 22 (22), 3208-3213,

Ygberg S, Akkuratov EE, Howard RJ, …, Brismar H, Aperia A, “A missense mutation converts the Na+,K+-ATPase into an ion channel and causes therapy-resistant epilepsy.”, J. Biol. Chem., 2021, 101355,

Morud J, Hardege I, Liu H, …, Zhang Y, Schafer WR, “Deorphanization of novel biogenic amine-gated ion channels identifies a new serotonin receptor for learning.”, Curr. Biol., 2021, 31 (19), 4282-4292.e6,

Chelebian E, Avenel C, Kartasalo K, …, Lundeberg J, Wählby C, “Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer.”, Cancers (Basel), 2021, 13 (19),

Chebli J, Rahmati M, Lashley T, …, Zetterberg H, Abramsson A, “The localization of amyloid precursor protein to ependymal cilia in vertebrates and its role in ciliogenesis and brain development in zebrafish.”, Sci Rep, 2021, 11 (1), 19115,

Thofte O, Bettoni S, Su Y, …, Blom AM, Riesbeck K, “Nontypeable Haemophilus influenzae P5 Binds Human C4b-Binding Protein, Promoting Serum Resistance.”, J. Immunol., 2021, 207 (6), 1566-1577,

Peris-Sampedro F, Stoltenborg I, Le May MV, …, Adan RAH, Dickson SL, “Genetic deletion of the ghrelin receptor (GHSR) impairs growth and blunts endocrine response to fasting in Ghsr-IRES-Cre mice.”, Mol Metab, 2021, 51, 101223,

Haniffa M, Taylor D, Linnarsson S, …, Webb S, Human Cell Atlas Developmental Biological Network, “A roadmap for the Human Developmental Cell Atlas.”, Nature, 2021, 597 (7875), 196-205,

Devkota R, Kaper D, Bodhicharla R, …, Borén J, Pilon M, “A genetic titration of membrane composition in Caenorhabditis elegans reveals its importance for multiple cellular and physiological traits.”, Genetics, 2021, 219 (1),

Waldmann L, Leyhr J, Zhang H, …, Allalou A, Haitina T, “The broad role of Nkx3.2 in the development of the zebrafish axial skeleton.”, PLoS ONE, 2021, 16 (8), e0255953,

Yu Y, Gao Y, Winblad B, Tjernberg LO, Schedin-Weiss S, “A Super-Resolved View of the Alzheimer’s Disease-Related Amyloidogenic Pathway in Hippocampal Neurons.”, J. Alzheimers Dis., 2021, 83 (2), 833-852,

Bernhem K, Fontana JM, Svensson D, …, Brismar H, Aperia A, “Super-resolution microscopy reveals that Na+/K+-ATPase signaling protects against glucose-induced apoptosis by deactivating Bad.”, Cell Death Dis, 2021, 12 (8), 739,

Dakhel S, Davies WIL, Joseph JV, …, Remeseiro S, Gunhaga L, “Chick fetal organ spheroids as a model to study development and disease.”, BMC Mol Cell Biol, 2021, 22 (1), 37,

Jiang M, Xie X, Zhu X, …, Larsson NG, Falkenberg M, “The mitochondrial single-stranded DNA binding protein is essential for initiation of mtDNA replication.”, Sci Adv, 2021, 7 (27),

Ehrencrona E, van der Post S, Gallego P, …, Hansson GC, Johansson MEV, “The IgGFc-binding protein FCGBP is secreted with all GDPH sequences cleaved but maintained by interfragment disulfide bonds.”, J. Biol. Chem., 2021, 297 (1), 100871,

Park KS, Svennerholm K, Crescitelli R, …, Gribonika I, Lötvall J, “Synthetic bacterial vesicles combined with tumour extracellular vesicles as cancer immunotherapy.”, J Extracell Vesicles, 2021, 10 (9), e12120,

Damenti M, Coceano G, Pennacchietti F, Bodén A, Testa I, “STED and parallelized RESOLFT optical nanoscopy of the tubular endoplasmic reticulum and its mitochondrial contacts in neuronal cells.”, Neurobiol. Dis., 2021, 155, 105361,

Makasewicz K, Wennmalm S, Stenqvist B, …, Linse S, Sparr E, “Cooperativity of α-Synuclein Binding to Lipid Membranes.”, ACS Chem Neurosci, 2021, 12 (12), 2099-2109,

Solorzano L, Wik L, Olsson Bontell T, …, Östman A, Wählby C, “Machine learning for cell classification and neighborhood analysis in glioma tissue.”, Cytometry A, 2021,

Michno W, Stringer KM, Enzlein T, …, Edwards FA, Hanrieder J, “Following spatial Aβ aggregation dynamics in evolving Alzheimer’s disease pathology by imaging stable isotope labeling kinetics.”, Sci Adv, 2021, 7 (25),

Jabbar KS, Dolan B, Eklund L, …, Simren M, Hansson GC, “Association between Brachyspira and irritable bowel syndrome with diarrhoea.”, Gut, 2021, 70 (6), 1117-1129,

Verron Q, Forslund E, Brandt L, …, Olofsson PE, Önfelt B, “NK cells integrate signals over large areas when building immune synapses but require local stimuli for degranulation.”, Sci Signal, 2021, 14 (684), eabe2740,

Padma AM, Carrière L, Krokström Karlsson F, …, Brännström M, Hellström M, “Towards a bioengineered uterus: bioactive sheep uterus scaffolds are effectively recellularized by enzymatic preconditioning.”, NPJ Regen Med, 2021, 6 (1), 26,

Lundberg E, Funke J, Uhlmann V, …, Carpenter A, Coehlo LP, “Which image-based phenotypes are most promising for using AI to understand cellular functions and why?”, Cell Syst, 2021, 12 (5), 384-387,

Östergren I, Pourrahimi AM, Darmadi I, …, Langhammer C, Müller C, “Highly Permeable Fluorinated Polymer Nanocomposites for Plasmonic Hydrogen Sensing.”, ACS Appl Mater Interfaces, 2021, 13 (18), 21724-21732,

Seeger C, Dyrhage K, Mahajan M, …, Lind SB, Andersson SGE, “The Subcellular Proteome of a Planctomycetes Bacterium Shows That Newly Evolved Proteins Have Distinct Fractionation Patterns.”, Front Microbiol, 2021, 12, 643045,

Dobson ETA, Cimini B, Klemm AH, …, Carpenter AE, Eliceiri KW, “ImageJ and CellProfiler: Complements in Open-Source Bioimage Analysis.”, Curr Protoc, 2021, 1 (5), e89,

Kalafateli AL, Satir TM, Vallöf D, Zetterberg H, Jerlhag E, “An amylin and calcitonin receptor agonist modulates alcohol behaviors by acting on reward-related areas in the brain.”, Prog Neurobiol, 2021, 200, 101969,

Martins GG, Cordelières FP, Colombelli J, …, Tinevez JY, Miura K, “Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists.”, F1000Res, 2021, 10, 334,

Christopher JA, Stadler C, Martin CE, …, Emili A, Lilley KS, “Subcellular proteomics.”, Nat Rev Methods Primers, 2021, 1 (1),

Sych T, Gurdap CO, Wedemann L, Sezgin E, “How Does Liquid-Liquid Phase Separation in Model Membranes Reflect Cell Membrane Heterogeneity?”, Membranes, 2021, 11 (5), 323,

Gao Y, Wennmalm S, Winblad B, Schedin-Weiss S, Tjernberg LO, “Live Cell FRET Imaging Reveals Amyloid β-Peptide Oligomerization in Hippocampal Neurons.”, Int J Mol Sci, 2021, 22 (9), 4530,

Paul-Gilloteaux P, Tosi S, Hériché JK, …, Miura K, Colombelli J, “Bioimage analysis workflows: community resources to navigate through a complex ecosystem.”, F1000Res, 2021, 10, 320,

Wahlgren WY, Golonka D, Westenhoff S, Möglich A, “Cryo-Electron Microscopy of Arabidopsis thaliana Phytochrome A in Its Pr State Reveals Head-to-Head Homodimeric Architecture.”, Front Plant Sci, 2021, 12, 663751,

Raj D, Billing O, Podraza-Farhanieh A, …, Kao G, Naredi P, “Alternative redox forms of ASNA-1 separate insulin signaling from tail-anchored protein targeting and cisplatin resistance in C. elegans.”, Sci Rep, 2021, 11 (1), 8678,

Nyström EEL, Martinez-Abad B, Arike L, …, Hansson GC, Johansson MEV, “An intercrypt subpopulation of goblet cells is essential for colonic mucus barrier function.”, Science, 2021, 372 (6539),

Devkota R, Henricsson M, Borén J, Pilon M, “The C. elegans PAQR-2 and IGLR-2 membrane homeostasis proteins are uniquely essential for tolerating dietary saturated fats.”, Biochim Biophys Acta Mol Cell Biol Lipids, 2021, 1866 (4), 158883,

Ali MM, Di Marco M, Mahale S, …, Kanduri M, Kanduri C, “LY6K-AS lncRNA is a lung adenocarcinoma prognostic biomarker and regulator of mitotic progression.”, Oncogene, 2021, 40 (13), 2463-2478,

Gnann C, Cesnik AJ, Lundberg E, “Illuminating Non-genetic Cellular Heterogeneity with Imaging-Based Spatial Proteomics.”, Trends Cancer, 2021, 7 (4), 278-282,

Ruiz M, Palmgren H, Henricsson M, …, Borén J, Pilon M, “Extensive transcription mis-regulation and membrane defects in AdipoR2-deficient cells challenged with saturated fatty acids.”, Biochim Biophys Acta Mol Cell Biol Lipids, 2021, 1866 (4), 158884,

Unnersjö-Jess D, Butt L, Höhne M, …, Brismar H, Blom H, “A fast and simple clearing and swelling protocol for 3D in-situ imaging of the kidney across scales.”, Kidney Int., 2021, 99 (4), 1010-1020,

Hu M, Zhang Y, Li X, …, Shao LR, Billig H, “TLR4-Associated IRF-7 and NFκB Signaling Act as a Molecular Link Between Androgen and Metformin Activities and Cytokine Synthesis in the PCOS Endometrium.”, J. Clin. Endocrinol. Metab., 2021, 106 (4), 1022-1040,

Öz R, Wang JL, Guerois R, …, Strick TR, Westerlund F, “Dynamics of Ku and bacterial non-homologous end-joining characterized using single DNA molecule analysis.”, Nucleic Acids Res., 2021, 49 (5), 2629-2641,

Johannesson J, Khan J, Hubert M, Teleki A, Bergström CAS, “3D-printing of solid lipid tablets from emulsion gels.”, Int J Pharm, 2021, 597, 120304,

Crescitelli R, Lässer C, Lötvall J, “Isolation and characterization of extracellular vesicle subpopulations from tissues.”, Nat Protoc, 2021, 16 (3), 1548-1580,

Nayakawde NB, Methe K, Premaratne GU, Banerjee D, Olausson M, “Combined Use of Detergents and Ultrasonication for Generation of an Acellular Pig Larynx.”, Tissue Eng Part A, 2021, 27 (5-6), 362-371,

Liu Y, Tang S, Fan J, …, Edman L, Wang J, “Highly Soluble CsPbBr3 Perovskite Quantum Dots for Solution-Processed Light-Emission Devices”, ACS Appl. Nano Mater., 2021, 4 (2), 1162-1174,

Corkery DP, Nadeem A, Aung KM, …, Wai SN, Wu Y, “Vibrio cholerae cytotoxin MakA induces noncanonical autophagy resulting in the spatial inhibition of canonical autophagy.”, J. Cell. Sci., 2021, 134 (5), jcs.252015,

Malyshev D, Dahlberg T, Wiklund K, …, Henriksson S, Andersson M, “Mode of Action of Disinfection Chemicals on the Bacterial Spore Structure and Their Raman Spectra.”, Anal. Chem., 2021, 93 (6), 3146-3153,

Layunta E, Jäverfelt S, Dolan B, Arike L, Pelaseyed T, “IL-22 promotes the formation of a MUC17 glycocalyx barrier in the postnatal small intestine during weaning.”, Cell Rep, 2021, 34 (7), 108757,

Le May MV, Peris-Sampedro F, Stoltenborg I, …, Adan RAH, Dickson SL, “Functional and Neurochemical Identification of Ghrelin Receptor (GHSR)-Expressing Cells of the Lateral Parabrachial Nucleus in Mice.”, Front. Neurosci., 2021, 15, 633018,

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Andersson EA, Mallard C, Ek CJ, “Circulating tight-junction proteins are potential biomarkers for blood-brain barrier function in a model of neonatal hypoxic/ischemic brain injury.”, Fluids Barriers CNS, 2021, 18 (1), 7,

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Ishaq O, Sadanandan SK, Wählby C, “Deep Fish: Deep Learning–Based Classification of Zebrafish Deformation for High-Throughput Screening”, SLAS DISCOVERY: Advancing Life Sciences R&D, 2017, 22 (1), 102-107,

Schizas N, Perry S, Andersson B, …, Kullander K, Hailer NP, “Differential Neuroprotective Effects of Interleukin-1 Receptor Antagonist on Spinal Cord Neurons after Excitotoxic Injury”, Neuroimmunomodulation, 2017, 24 (4-5), 220-230,

Bombrun M, Ranefall P, Lindblad J, …, Nilsson M, Wählby C, “Decoding Gene Expression in 2D and 3D”, Scandinavian Conference on Image Analysis 2017, 2017, 257-268,


Villamil Giraldo AM, Fyrner T, Wennmalm S, …, Öllinger K, Ederth T, “Spontaneous Vesiculation and pH-Induced Disassembly of a Lysosomotropic Detergent: Impacts on Lysosomotropism and Lysosomal Delivery.”, Langmuir, 2016, 32 (50), 13566-13575,

Scharaw S, Iskar M, Ori A, …, Bork P, Pepperkok R, “The endosomal transcriptional regulator RNF11 integrates degradation and transport of EGFR.”, J. Cell Biol., 2016, 215 (4), 543-558,

Gibbs A, Buggert M, Ranefall P, …, Broliden K, Tjernlund A, “Analysis of the Distribution of CD103 on CD8 T Cells in Blood and Genital Mucosa of HIVinfected Female Sex Workers”, Conference on HIV Research for Prevention (HIV R4P), 2016, October 17–20, Chicago, 2016

Blom H, Bernhem K, Brismar H, “Sodium pump organization in dendritic spines.”, Neurophotonics, 2016, 3 (4), 041803,

Nagaraj V, Kazim AS, Helgeson J, …, Zhang E, Renström E, “Elevated Basal Insulin Secretion in Type 2 Diabetes Caused by Reduced Plasma Membrane Cholesterol.”, Mol. Endocrinol., 2016, 30 (10), 1059-1069,

, “Abstracts of the HIV Research for Prevention Meeting, HIVR4P, 17-20 October, 2016, Chicago, USA”, AIDS Research and Human Retroviruses, 2016, 32 (S1), 1-409,

Uhlen M, Bandrowski A, Carr S, …, Snyder M, Yamamoto T, “A proposal for validation of antibodies.”, Nat. Methods, 2016, 13 (10), 823-827,

Nejedla M, Sadi S, Sulimenko V, …, Aspenström P, Karlsson R, “Profilin connects actin assembly with microtubule dynamics.”, Mol. Biol. Cell, 2016, 27 (15), 2381-2393,

Kaucka M, Ivashkin E, Gyllborg D, …, Hellander A, Adameyko I, “Analysis of neural crest-derived clones reveals novel aspects of facial development.”, Sci Adv, 2016, 2 (8), e1600060,

Liu W, Edin F, Blom H, …, Laurell G, Rask-Andersen H, “Super-resolution structured illumination fluorescence microscopy of the lateral wall of the cochlea: the Connexin26/30 proteins are separately expressed in man.”, Cell Tissue Res., 2016, 365 (1), 13-27,

Burlaka I, Nilsson LM, Scott L, …, Brismar H, Aperia A, “Prevention of apoptosis averts glomerular tubular disconnection and podocyte loss in proteinuric kidney disease.”, Kidney Int., 2016, 90 (1), 135-148,

Agostinho A, Manneberg O, van Schendel R, …, Brismar H, Höög C, “High density of REC8 constrains sister chromatid axes and prevents illegitimate synaptonemal complex formation.”, EMBO Rep., 2016, 17 (6), 901-913,

Vanherberghen B, Frisk T, Forslund E, …, Guldevall K, Önfelt B, “Microwell-Based Live Cell Imaging of NK Cell Dynamics to Assess Heterogeneity in Motility and Cytotoxic Response.”, Methods Mol. Biol., 2016, 1441, 87-106,

Guldevall K, Brandt L, Forslund E, …, Uhlin M, Önfelt B, “Microchip Screening Platform for Single Cell Assessment of NK Cell Cytotoxicity.”, Front Immunol, 2016, 7, 119,

Rabasovic MD, Sisamakis E, Wennmalm S, Widengren J, “Label-Free Fluctuation Spectroscopy Based on Coherent Anti-Stokes Raman Scattering from Bulk Water Molecules.”, Chemphyschem, 2016, 17 (7), 1025-1033,

Aperia A, Akkuratov EE, Fontana JM, Brismar H, “Na+-K+-ATPase, a new class of plasma membrane receptors.”, Am. J. Physiol., Cell Physiol., 2016, 310 (7), C491-C495,

Ranefall P, Wählby C, “Global gray-level thresholding based on object size.”, Cytometry A, 2016, 89 (4), 385-390,

Schedin-Weiss S, Caesar I, Winblad B, Blom H, Tjernberg LO, “Super-resolution microscopy reveals γ-secretase at both sides of the neuronal synapse.”, Acta Neuropathol Commun, 2016, 4, 29,

Holm A, Magnusson KE, Vikström E, “Pseudomonas aeruginosa N-3-oxo-dodecanoyl-homoserine Lactone Elicits Changes in Cell Volume, Morphology, and AQP9 Characteristics in Macrophages”, Front. Cell. Infect. Microbiol., 2016, 6,

Matuszewski DJ, Wählby C, Puigvert JC, Sintorn IM, “PopulationProfiler: A Tool for Population Analysis and Visualization of Image-Based Cell Screening Data”, PLoS ONE, 2016, 11 (3), e0151554,

Navarro JR, Wennmalm S, Godfrey J, Breitholtz M, Edlund U, “Luminescent Nanocellulose Platform: From Controlled Graft Block Copolymerization to Biomarker Sensing.”, Biomacromolecules, 2016, 17 (3), 1101-1109,

Turdalieva A, Solandt J, Shambetova N, …, Zelenina M, Fu Y, “Bioelectric and Morphological Response of Liquid-Covered Human Airway Epithelial Calu-3 Cell Monolayer to Periodic Deposition of Colloidal 3-Mercaptopropionic-Acid Coated CdSe-CdS/ZnS Core-Multishell Quantum Dots.”, PLoS ONE, 2016, 11 (2), e0149915,

Liu F, Koval M, Ranganathan S, …, Kelleher NL, Baker MS, “Systems Proteomics View of the Endogenous Human Claudin Protein Family.”, J. Proteome Res., 2016, 15 (2), 339-359,

Sadanandan SK, Baltekin O, Magnusson KEG, …, Elf J, Wahlby C, “Segmentation and Track-Analysis in Time-Lapse Imaging of Bacteria”, IEEE J. Sel. Top. Signal Process., 2016, 10 (1), 174-184,

Unnersjö-Jess D, Scott L, Blom H, Brismar H, “Super-resolution stimulated emission depletion imaging of slit diaphragm proteins in optically cleared kidney tissue.”, Kidney Int., 2016, 89 (1), 243-247,

Sadanandan SK, Ranefall P, Wählby C, “Feature Augmented Deep Neural Networks for Segmentation of Cells”,, 2016, 231-243,

Mignardi M, Ishaq O, Qian X, Wahlby C, “Bridging Histology and Bioinformatics—Computational Analysis of Spatially Resolved Transcriptomics”, Proc. IEEE, 2016, 1-12,

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