Optical Clearing and Expansion Microscopy I & II

We welcome you to two symposiums in Stockholm on optical clearing and expansion microscopy. The first symposium takes place at the Wenner-Gren Center on Sep 12th, and the second symposium at SciLifeLab on Sep 13th-14th. Please see the below flyers for more info.

Register by emailing Hans Blom, hans.blom@scilifelab.se

The 2nd International Meeting on Optical Biosensors – IMOB23

Welcome to IMOB23 that will gather and consolidate expertise in the field to share and reflect on the latest information and to promote accelerated development in the field. The in-person meeting is directed to all scientists with an interest in optical biosensors as tools to answer scientific questions in any area of biology and biomedical sciences.

Organizer: Medical Cell Biology, Uppsala University
Location: Humanities Theatre, Uppsala
Time of event: Aug 23rd-25th, 2023
Homepage: www.imob23.se
Contact email: imob23@akademikonferens.se

Open session on NIR Nanoscopy and Vibrational Microscopy

Most welcome to an open lecture session on “Near-IR Nanoscopy and Vibrational Microscopy”, arranged within the framework of our ongoing NanoVIB H2020 project. Within this session, we have the honour to have a (Zoom) lecture by Stefan W Hell (MPI Göttingen/Heidelberg, Nobel Laureate and the pioneer of fluorescence super-resolution imaging) with the title “MINFLUX nanoscopy and related matters”, and the session also includes short (IRL) presentations describing the aims, partners and major activities of the NanoVIB project.

Organizer: NanoVIB H2020 project, Jerker Widengren, SciLifeLab
Location: FB54, Albanova University Center, Stockholm
Online: https://kth se.zoom.us/j/62429164481
Time of event: 13:00-15:00, May 16th, 2023
Contact email: jwideng@kth.se

CAT Workshop 2023

The Centre for Cellular Imaging, which is the national SciLifeLab facility for Correlative Array Tomography in Sweden, has the great pleasure to welcome you to the first Cellular 3D volume – Correlative Array Tomography (CAT) Workshop! It is designed to bring experts, researchers and industry together interested in Cellular 3D volume – CAT to introduce this new technology, stimulate knowledge exchange and the formation of collaborations.

Organizer: The NMI node Centre for Cellular Imaging
Location: Wallenberg Centre & Centre for Cellular Imaging, Gothenburg, Sweden
Time of event: Nov 29 – Dec 1, 2023
Registration: https://forms.office.com/e/5jzrEWDmCH
Weblink: https://www.gu.se/en/core-facilities/centre-for-cellular-imaging/cat-workshop-2023
Contact email: cci@gu.se

EMBO Practical Course: Advanced methods in bioimage analysis

This advanced course on methods in bioimage analysis concentrates on teaching cutting-edge concepts and tools for quantitative image analysis and will seek to upgrade the competencies of future bioimage analysis experts on both theoretical algorithm advancements as well as on practical implementation skills.

Organizer: EMBL Heidelberg together with the BioImage Informatics Facility in Uppsala
Location: EMBL Heidelberg
Time of event: Sep 10-15, 2023
Deadline for registration: Jun 18, 2023
Weblink: https://www.embl.org/about/info/course-and-conference-office/events/bia23-01/
Contact email: diah.yulianti@embl.de

Phd Course: New imaging & Fluctuation Metods – Superresolution, Lightsheet and FCS-techniques (3 ECTS)

This course covers lectures and practical demonstrations in super-resolution microscopy and light-sheet imaging, as well as fluctuation correlation spectroscopy techniques. During week 2 participants (at home) use the aquired knowledge about the advance microscopy techniques to plan their own research projects.

Organizer: KTH-ALM
Location: SciLifeLab in Solna, Tomtebodavägen 23
Time: May 22nd-25th lectures/demos; May 29th – June 2nd own project, 2023
Contact and registration: stewen@kth.se, Stefan Wennmalm KTH/SciLifeLab

Bridging Nordic Microscopy Infrastructure Symposium 2023

Welcome to the second meeting of the Bridging Nordic Microscopy Infrastructures (BNMI) network that will take place at the University of Southern Denmark. The aim of the meeting is to bring together scientists who develop or utilize biological imaging methods, the Nordic imaging core facilities, and representatives of industry to discuss projects and present the latest imaging technologies and processing methods.

Organizer: BNMI
Location: University of Southern Denmark, Odense
Time of event: August 22nd-25th, 2023
Deadline for registration: August 8th, 2023 (Early-bird until June 1st)
Weblink: https://event.sdu.dk/bnmi2023
Contact: bnmi2023@sdu.dk

NMI node receives funding from the Chan Zuckerberg Initiative

The Centre for Cellular Imaging (CCI) at the University of Gothenburg has been awarded funding from the Chan Zuckerberg Initiative through their imaging program to Advance Imaging Through Collaborative Projects. CCI will take part in two different projects where prof. Julia Fernández-Rodríguez will be co-PI:

COMULISglobe: Multimodal Imaging across Scales in Life Sciences, to harness the power of multimodal imaging across scales from basic research to clinical diagnostics, facilitate access, and train a new generation of scientists

Society for Knowledge Exchange in BioImage Analysis (NEUBIAS), to secure the sustainability of the Network of European Bioimage Analysts, establish strong connections to similar initiatives, and share knowledge about state-of-the-art bioimage analysis tools and methods

You can find more information at the Chan Zuckerberg Initiative website

TissUUmaps 3: Interactive visualization and quality assessment of large-scale spatial omics

We present TissUUmaps, browser-based tool for GPU-accelerated visualization and interactive exploration of tens of millions of datapoints overlaying tissue samples. Users can visualize markers and regions, explore spatial statistics and quantitative analyses of tissue morphology, and assess the quality of decoding in situ transcriptomics data. TissUUmaps provides instant multi-resolution image viewing, can be customized, shared, and also integrated in Jupyter Notebooks. It is also possible to directly connect spatial markers with markers in feature space, such as UMAP plots, to interactively relate feature space with physical space. TissUUmaps was created in collaboration between BIIF and the Wählby lab. You can read more about it and test the software on its web page: https://tissuumaps.github.io/

During the seminar, we will specifically showcase new features of TissUUmaps 3.1, such as:
– HDF5 / AnnData files loading
– Network diagram visualization
– Multiple datasets displayed on a grid
– Plugin engine

The webinar will be given by Christophe Avenel and Fredrik Nysjö.

Organizer/NMI node: BIIF at Uppsala University
Location: Online
Time of event: 10:00-12:00, February 14th, 2023
Deadline for registration: February 14, 2023
Weblink: https://www.scilifelab.se/event/tissuumaps-3-interactive-visualization-and-quality-assessment-of-large-scale-spatial-omics-2/
Contact: christophe.avenel@it.uu.se

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